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Methodology article
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
Potapov A, Goemann B, Wingender E
BMC Bioinformatics, 2008 9:227 (2 May 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/227/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-227.pdf
Methodology article
SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
Kurgan L, Cios K, Chen K
BMC Bioinformatics, 2008 9:226 (1 May 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/226/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-226.pdf
Methodology article
A copula method for modeling directional dependence of genes
Kim J, Jung Y, Sungur E, Han K, Park C, Sohn I
BMC Bioinformatics, 2008 9:225 (1 May 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/225/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-225.pdf
Methodology article
Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory
Churbanov A, Winters-Hilt S
BMC Bioinformatics, 2008 9:224 (30 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/224/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-224.pdf
Methodology article
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions
Churkin A, Barash D
BMC Bioinformatics, 2008 9:222 (29 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/222/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-222.pdf
PubMed
http://www.biomedcentral.com/pubmed/18445289
Methodology article
Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
Spiess A, Feig C, Ritz C
BMC Bioinformatics, 2008 9:221 (29 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/221/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-221.pdf
PubMed
http://www.biomedcentral.com/pubmed/18445269
Methodology article
ConStruct: improved construction of RNA consensus structures
Wilm A, Linnenbrink K, Steger G
BMC Bioinformatics, 2008 9:219 (28 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/219/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-219.pdf
PubMed
http://www.biomedcentral.com/pubmed/18442401
Methodology article
Gene prediction in metagenomic fragments: a large scale machine learning approach
Hoff K, Tech M, Lingner T, Daniel R, Morgenstern B, Meinicke P
BMC Bioinformatics, 2008 9:217 (28 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/217/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-217.pdf
PubMed
http://www.biomedcentral.com/pubmed/18442389
Methodology article
Binning sequences using very sparse labels within a metagenome
Chan C, Hsu A, Halgamuge S, Tang S
BMC Bioinformatics, 2008 9:215 (28 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/215/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-215.pdf
PubMed
http://www.biomedcentral.com/pubmed/18442374
Software
GENOMEPOP: A program to simulate genomes in populations
Carvajal-Rodriguez A
BMC Bioinformatics, 2008 9:223 (30 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/223/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-223.pdf
Software
An efficient visualization tool for the analysis of protein mutation matrices
David M, Lapid C, Daria V
BMC Bioinformatics, 2008 9:218 (28 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/218/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-218.pdf
PubMed
http://www.biomedcentral.com/pubmed/18442400
Research article
Studying the functional conservation of cis-regulatory modules and their transcriptional output
Bauer D, Bailey T
BMC Bioinformatics, 2008 9:220 (29 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/220/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-220.pdf
PubMed
http://www.biomedcentral.com/pubmed/18442418
Research article
Normalization for triple-target microarray experiments
Martin-Magniette M, Aubert J, Bar-Hen A, Elftieh S, Magniette F, Renou J, Daudin J
BMC Bioinformatics, 2008 9:216 (28 April 2008)
Abstract
http://www.biomedcentral.com/1471-2105/9/216/abstract
Provisional PDF http://www.biomedcentral.com/content/pdf/1471-2105-9-216.pdf
PubMed
http://www.biomedcentral.com/pubmed/18442385
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