The genomics of cancer progression and heterogeneity - A new special collection in Genome Biology

Submit a manuscript Editorial Board Author Instructions Article Alerts Dear Dr Wirawan, Genome Biology's special collection on cancer progression and heterogeneity, guest edited by Professor Elaine R. Mardis and Professor Samuel Aparicio, has now been published. In the collection, we present over 20 primary research articles providing insights into between-patient and within-patient heterogeneity in cancer, the processes that lead to cancer progression, and mechanisms of therapy response and resistance. Additionally, the collection includes specially commissioned articles, which take the reader from the challenges of translating cancer genomics, through an overview of the current state of the field of personalized genomics in the context of cancer heterogeneity, to the latest advances in diagnostic methods. These articles are written by the leaders in the field, including Charles Swanton, Anne-Lise Børresen-Dale, Carlo Croce, Alberto Bardelli and many others. A selection of some of the collection articles: Editorial   Tumor heterogeneity: next-generation sequencing enhances the view from the pathologist's microscope Samuel Aparicio and Elaine Mardis Abstract | Full Text | PDF Opinion The multitude of molecular analyses in cancer: the opening of Pandora's box Hege G Russnes, Per E Lønning, Anne-Lise Børresen-Dale, Ole C Lingjærde Abstract | Full Text | PDF Opinion Toward better benchmarking: challenge-based methods assessment in cancer genomics Paul C. Boutros, Adam A. Margolin, Joshua M. Stuart, Andrea Califano, Gustavo Stolovitzky Abstract | Full Text | PDF Research Genome-driven integrated classification of breast cancer validated in over 7,500 samples Hamid R Ali, Oscar M Rueda, Suet-Feung Chin, Christina Curtis, Mark Dunning, Samuel AJR Aparicio, Carlos Caldas Abstract | Full Text | PDF Research Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions Angela R Brannon, Efsevia Vakiani, Brooke E Sylvester, Sasinya N Scott, Gregory McDermott, Ronak H Shah, Krishan Kania, Agnes Viale, Dayna M Oschwald, Vladimir Vacic, Anne-Katrin Emde, Andrea Cercek, Rona Yaeger, Nancy E Kemeny, Leonard B Saltz, Jinru Shia, Michael I D'Angelica, Martin R Weiser, David B Solit and Michael F Berger Abstract | Full Text | PDF Method Unraveling the clonal hierarchy of somatic genomic aberrations Davide Prandi, Sylvan C Baca, Alessandro Romanel, Christopher E Barbieri, Juan Miguel Mosquera, Jacqueline Fontugne, Himisha Beltran, Andrea A Sboner, Levi A Garraway, Mark A Rubin, Francesca Demichelis Abstract | Full Text | PDF Access the full special collection here. Alongside open access research, Genome Biology publishes expert reviews and commentaries, which are available via subscription. Take advantage of our 30-day free trial subscription to access the high-quality commissioned content in this special collection. For more information about Genome Biology please visit our website, or, contact the editorial office. With best wishes, Rafal Marszalek, PhD Special Issue Editor and Louisa Flintoft, PhD Deputy Editor

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Latest Article Alert from AIDS Research and Therapy

The following new articles have just been published in AIDS Research and Therapy

For articles using Author Version-first publication you will see a provisional PDF corresponding to the accepted manuscript. In these instances, the fully formatted Final Version PDF and full text (HTML) versions will follow in due course.


Research
Expression of activating receptors on natural killer cells from AIDS-related lymphoma patients
Mercier-Bataille D, Sanchez C, Baier C, Le Treut T, Mounier N, Mokhtari S, Olive D, Baumstarck K, Sébahoun G, Besson C, Costello RT
AIDS Research and Therapy 2014, 11:38 (24 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/38/abstract
Provisional PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-38.pdf

Case report
Successful use of extracorporeal membrane oxygenation in a human immunodeficiency virus infected patient with severe acute respiratory distress Syndrome
Samalavicius R, Serpytis M, Ringaitiene D, Grazulyte D, Bertasiute R, Rimkus B, Matulionyte R, Ambrazaitiene R, Sipylaite J, Kacergius T, Griskevicius L
AIDS Research and Therapy 2014, 11:37 (21 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/37/abstract
Provisional PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-37.pdf

Research
The development of drug resistance mutations K103N Y181C and G190A in long term Nevirapine-containing antiviral therapy
Wang Y, Xing H, Liao L, Wang Z, Su B, Zhao Q, Feng Y, Ma P, Liu J, Wu J, Ruan Y, Shao Y
AIDS Research and Therapy 2014, 11:36 (21 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/36/abstract
Provisional PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-36.pdf

Review
A consensus statement on the renal monitoring of Australian patients receiving tenofovir based antiviral therapy for HIV/HBV infection
Holt SG, Gracey DM, Levy MT, Mudge DW, Irish AB, Walker RG, Baer R, Sevastos J, Abbas R, Boyd MA
AIDS Research and Therapy 2014, 11:35 (10 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/35/abstract
Full text http://www.aidsrestherapy.com/content/11/1/35
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-35.pdf

Case report
Acute tubular nephropathy in a patient with acute HIV infection: review of the literature
Ananworanich J, Datta AA, Fletcher JL, Townamchai N, Chomchey N, Kroon E, Sereti I, Valcour V, Kim JH
AIDS Research and Therapy 2014, 11:34 (7 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/34/abstract
Full text http://www.aidsrestherapy.com/content/11/1/34
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-34.pdf

Research
Failure of combined antiretroviral therapy intensification with maraviroc and raltegravir in chronically HIV-1 infected patients to reduce the viral reservoir: the IntensHIV randomized trial
Lafeuillade A, Assi A, Poggi C, Bresson-Cuquemelle C, Jullian E, Tamalet C
AIDS Research and Therapy 2014, 11:33 (7 October 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/33/abstract
Full text http://www.aidsrestherapy.com/content/11/1/33
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-33.pdf
PubMed http://www.aidsrestherapy.com/pubmed/25320633

Research
Impact of second-line antiretroviral regimens on lipid profiles in an African setting: the DART trial sub-study
Gomo ZA, Hakim JG, Walker SA, Tinago W, Mandozana G, Kityo C, Munderi P, Katabira E, Reid A, Gibb DM, Gilks CF, for the DART Team
AIDS Research and Therapy 2014, 11:32 (2 October 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/32/abstract
Full text http://www.aidsrestherapy.com/content/11/1/32
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-32.pdf
PubMed http://www.aidsrestherapy.com/pubmed/25320632








You currently receive AIDS Research and Therapy article alerts whenever new articles are published

To change the email format or frequency, to update your email address or to stop receiving these alerts, visit the article alert sign up page http://www.aidsrestherapy.com/my/preferences

For help or more information, contact us at info@biomedcentral.com

Latest Article Alert from AIDS Research and Therapy

The following new articles have just been published in AIDS Research and Therapy

For articles using Author Version-first publication you will see a provisional PDF corresponding to the accepted manuscript. In these instances, the fully formatted Final Version PDF and full text (HTML) versions will follow in due course.


Research
Expression of activating receptors on natural killer cells from AIDS-related lymphoma patients
Mercier-Bataille D, Sanchez C, Baier C, Le Treut T, Mounier N, Mokhtari S, Olive D, Baumstarck K, Sébahoun G, Besson C, Costello RT
AIDS Research and Therapy 2014, 11:38 (24 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/38/abstract
Provisional PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-38.pdf

Case report
Successful use of extracorporeal membrane oxygenation in a human immunodeficiency virus infected patient with severe acute respiratory distress Syndrome
Samalavicius R, Serpytis M, Ringaitiene D, Grazulyte D, Bertasiute R, Rimkus B, Matulionyte R, Ambrazaitiene R, Sipylaite J, Kacergius T, Griskevicius L
AIDS Research and Therapy 2014, 11:37 (21 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/37/abstract
Provisional PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-37.pdf

Research
The development of drug resistance mutations K103N Y181C and G190A in long term Nevirapine-containing antiviral therapy
Wang Y, Xing H, Liao L, Wang Z, Su B, Zhao Q, Feng Y, Ma P, Liu J, Wu J, Ruan Y, Shao Y
AIDS Research and Therapy 2014, 11:36 (21 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/36/abstract
Provisional PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-36.pdf

Review
A consensus statement on the renal monitoring of Australian patients receiving tenofovir based antiviral therapy for HIV/HBV infection
Holt SG, Gracey DM, Levy MT, Mudge DW, Irish AB, Walker RG, Baer R, Sevastos J, Abbas R, Boyd MA
AIDS Research and Therapy 2014, 11:35 (10 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/35/abstract
Full text http://www.aidsrestherapy.com/content/11/1/35
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-35.pdf

Case report
Acute tubular nephropathy in a patient with acute HIV infection: review of the literature
Ananworanich J, Datta AA, Fletcher JL, Townamchai N, Chomchey N, Kroon E, Sereti I, Valcour V, Kim JH
AIDS Research and Therapy 2014, 11:34 (7 November 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/34/abstract
Full text http://www.aidsrestherapy.com/content/11/1/34
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-34.pdf

Research
Failure of combined antiretroviral therapy intensification with maraviroc and raltegravir in chronically HIV-1 infected patients to reduce the viral reservoir: the IntensHIV randomized trial
Lafeuillade A, Assi A, Poggi C, Bresson-Cuquemelle C, Jullian E, Tamalet C
AIDS Research and Therapy 2014, 11:33 (7 October 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/33/abstract
Full text http://www.aidsrestherapy.com/content/11/1/33
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-33.pdf
PubMed http://www.aidsrestherapy.com/pubmed/25320633

Research
Impact of second-line antiretroviral regimens on lipid profiles in an African setting: the DART trial sub-study
Gomo ZA, Hakim JG, Walker SA, Tinago W, Mandozana G, Kityo C, Munderi P, Katabira E, Reid A, Gibb DM, Gilks CF, for the DART Team
AIDS Research and Therapy 2014, 11:32 (2 October 2014)
Abstract http://www.aidsrestherapy.com/content/11/1/32/abstract
Full text http://www.aidsrestherapy.com/content/11/1/32
PDF http://www.aidsrestherapy.com/content/pdf/1742-6405-11-32.pdf
PubMed http://www.aidsrestherapy.com/pubmed/25320632








You currently receive AIDS Research and Therapy article alerts whenever new articles are published

To change the email format or frequency, to update your email address or to stop receiving these alerts, visit the article alert sign up page http://www.aidsrestherapy.com/my/preferences

For help or more information, contact us at info@biomedcentral.com